O-Antigen Description

Serogroup:O98
Serotype H:
Serotype K:
Strain:M1277
Structure:
->3)aLQuiNAc(1->4)aDGalNAcA(1->3)aLQuiNAc(1->3)bDGlcNAc(1->
Comment:- Structure [1]
GTs
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbwU

aLQuiNAc(1->

->4)aDGalNAcA

1 | 3
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbwV

aDGalNAcA(1->

->3)aLQuiNAc

2 | 2
GT NameDonorAcceptorScore / e-value
O64-O064_19


86 / 3e-21
O9-MtfB

aDMan(1->

->3)aDMan

86 / 6e-21
O187-O187_12


86 / 5e-21
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbwW

aLQuiNAc(1->

->3)bDGlcNAc

3 | 1
GT NameDonorAcceptorScore / e-value
O26-WbuB

aLFucNAc(1->

->3)bDGlcNAc

456 / 6e-163
O108-O108_18


455 / 2e-162
O25-WbuB


453 / 2e-161
O4-WbuB

aLFucNAc(1->

->3)bDGlcNAc

452 / 7e-161
O177-WbuB


451 / 1e-160
O12-O012_09


450 / 1e-160
O151-WbfG


447 / 4e-159
O118-WbfG


447 / 4e-159
O29-WbuB


446 / 2e-158
O172-WbuB

aLFucNAc(1->

->3)aDGlcNAc

446 / 9e-159
O15-WbuB


445 / 4e-158
O145-WbuB

aLFucNAm(1->

->3)bDGlcNAc

443 / 2e-157
O181-O181_07


359 / 1e-124
O186-O186_16


337 / 6e-116
O123-WbwH


330 / 6e-113
O163-O163_11


310 / 2e-105
NMR
1H-NMR5.36 3.81 3.86 3.15 3.79 1.22 5.14 4.29 4.10 4.40 4.76 4.93 4.04 3.84 3.21 4.18 1.23 4.66 3.81 3.72 3.51 3.46 3.97 3.78 1.95 1.98 1.99 2.01
Solvent: D2O
Temp: 330K
pD:
Ref: Acetone 2.225 ppm
Comment: 1H-NMR [1], pH=6.5, de-O-acetylated
13C-NMR97.00 53.70 79.30 76.70 68.90 17.30 97.70 50.40 69.30 75.70 72.20 97.80 54.50 75.80 74.80 68.60 17.30 102.70 56.60 78.90 69.40 76.50 62.00 22.80 22.90 23.00 23.10 174.20 174.70 174.70 175.00 175.00 175.10
Solvent: D2O
Temp: 330K
pD:
Ref: Acetone 31.07 ppm
Comment: 13C-NMR [1], pH=6.5, de-O-acetylated
Enzymes
FlippaseMLNNNLLKNIVIYGGVTGASRMLPILLLPFYLSAMPIEDYGRIEVLVALFNFVIILGSLQLETAIQRYMY KVEDKLNYTYTILIATFFFSILILFLTVIFSIKISFSLFNSGIESTNIRIIALSCVFYNLSSIFMIYFRY SEQEKIFYIISLFQVFVTSVVTYLLVVVEKLANFGYVVGIFSGWLIVFLLSMFTILWSKRKFIGEIKPDF SILKLSINFALPQIPARIGSFFIQFGNRFIVLSYFGSATVALFGVSVKFAAPFQLLYIAFTMAWNPYLYK NETSDDLEFKINKILKLLLIFVLLSSVALHYGSHWIIDKYFQNNYKEVKSLIFIAVLPSGLLIAKDILET GVRLSGKTKYISHAYFLSVTVTISLMLLSKNINNVFESTLIGTITLLLATYYYSEKVYHFKYSRCVLYTL CGLLIIILGNMII
Trembl: A5WZ51
PolymeraseMNRLQANAVLAHLISYYMFIIFIVCCIIYYSLFIAVGIDSHEPIRGFFYPANIIDHYIYLENYESLKNGN VNFVGINNIGIALVYYIYFNLLELMGFIIIPEKFSLILNLFIFFLCFISFKRIVRKLNLDITVTWLFIFN CSFWYFAQLINKDVFTIFIFFKLIEYALYNNKIGIFLIFLFSFFIRIQLPAIICVYLFFIYTKPTLKNLI IAYLAISIFNGYISRYQSLIIDESTLSDGLSAFVYQMNINYGVGSLLFNPVRIAQSLYSVLISFDFTYEY GIDVSKLKNIPQVMIFIILSPWIIRAYVRYNCFMKTKVKYVMAIVLAFFLVWLLNPTINSRYVMLIIPFL TLIGLYSLKFGKYIKHENIDNKLSLSSKHNSTFL
Trembl: A5WZ52
Literature
  • First Author: Marsden, BJ. "Serological and structural relationships between Escherichia coli O:98 and Yersinia enterocolitica O:11,23 and O:11,24 lipopolysaccharide O-antigens". Biochemistry and Cell Biology. 72(5-6. (1994), pp 163-168 PubMed: [7530967]
  • First Author: Cunneen, MM. "The Yersinia kristensenii O11 O-antigen gene cluster was acquired by lateral gene transfer and incorporated at a novel chromosomal locus". Molecular Biology and Evolution. 24(6). (2007), pp 1355-1365 PubMed: [17400574]