O-Antigen Description

Serogroup:O16
Serotype H:48
Serotype K:
Strain:K-12
Structure:
                                   aDGlc(1->6)
                                            |
->2)bDGalf(1->6)aDGlc(1->3)aLRha2Ac(1->3)aDGlcNAc(1->
Comment:- Structure [1]
GTs
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbbI

bDGalf(1->

->6)aDGlc

1 | 3
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbbK

aDGlc(1->

->3)aLRha

2 | 2
GT NameDonorAcceptorScore / e-value
O109-weiM

aDGlc(1->

->3)aL6dTal

256 / 5e-84
O25-WekC


133 / 3e-37
O123-WfbF


127 / 4e-35
O186-O186_12


127 / 1e-35
O12-O012_05


102 / 9e-27
O172-Orf5


87 / 2e-21
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbbL

aLRha(1->

->3)aDGlcNAc

3 | 1
GT NameDonorAcceptorScore / e-value
O132-O132_08


220 / 4e-72
O48-O048_08


191 / 1e-60
O35-WcnZ


171 / 4e-53
O119-WekH

aLRha(1->

->3)aDGlcNAc

167 / 9e-52
O39-O039_13


165 / 7e-51
O75-wekZ


152 / 5e-46
O139-WfaL

aLRha(1->

->3)aDGlcNAc

133 / 9e-39
NMR
1H-NMR5.09 4.18 4.29 4.05 3.91 3.71 4.97 3.56 3.72 3.56 4.02 3.95 4.93 5.17 3.96 3.62 4.13 1.30 4.99 4.20 3.78 3.72 4.02 3.84 5.02 3.59 3.78 3.45 3.78 3.90
Solvent: D2O
Temp: 30C
pD:
Ref: Acetone 2.230 ppm
Comment: 1H-NMR [1]
13C-NMR107.20 87.50 76.80 83.40 71.40 64.20 98.10 72.10 74.10 70.20 71.40 66.70 99.70 69.70 74.50 71.70 69.90 17.70 96.50 54.00 80.80 69.60 72.60 67.40 99.30 72.70 74.30 70.80 73.10 61.80
Solvent: D2O
Temp: 30C
pD:
Ref: Acetone 31.45 ppm
Comment: 13C-NMR [1]
Enzymes
FlippaseMNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGIFGFCQATMLYMIMFVE YGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIFLTSMTLLVPEYNKHAVII WSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIPLTFIFVNTKSDIAIAGFIQS SANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGFHVFISTSAISLYSTGIVIILGF ISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRISSTLVLNRVKGVILIKKSLTCLSLI GGAFSLILLLGASILVKISIGPGYDNAVIVLMIISPLPFLISLSNVYGIQVMLTHNYKKE FSKILIAAGLLSLLLIFPLTTLFKEIGAAITLLATECLVTSLMLMFVRNNKLLVC
Trembl: P37746
PolymeraseMIYLVISVFLITAFICLYLKKDIFYPAVCVNIIFALVLLGYEITSDIYAFQLNDATLIFL LCNVLTFTLSCLLTESVLDLNIRKVNNAIYSIPSKKVHNVGLLVISFSMIYICMRLSNYQ FGTSLLSYMNLIRDADVEDTSRNFSAYMQPIILTTFALFIWSKKFTNTKVSKTFTLLVFI VFIFAIILNTGKQIVFMVIISYAFIVGVNRVKHYVYLITAVGVLFSLYMLFLRGLPGGMA YYLSMYLVSPIIAFQEFYFQQVSNSASSHVFWFFERLMGLLTGGVSMSLHKEFVWVGLPT NVYTAFSDYVYISAELSYLMMVIHGCISGVLWRLSRNYISVKIFYSYFIYTFSFIFYHES FMTNISSWIQITLCIIVFSQFLKAQKIK
Trembl: P37748
Literature
  • First Author: Stevenson, G. "Structure of the O antigen of Escherichia coli K-12 and the sequence of its rfb gene cluster". Journal of Bacteriology. 176(13. (1994), pp 4144-56 PubMed: [7517391]
  • First Author: Iguchi A. "A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster". DNA Research. 22. (2015), pp 101-107 PubMed: [25428893]