O-Antigen Description

Serogroup:O10
Serotype H:4
Serotype K:5
Strain:
Structure:
->3)aLRha(1->3)aLRha(1->3)aDGal(1->3)bDGlcNAc(1->
                  |
 aDFuc4NBuR3OH(1->2)
Comment:- Structure [1]
- aDFuc is found as aDFuc4NAc (60%) or aDFuc4NBuR3OH (40%)
GTs
GT nameDonorAcceptorPosition | Link.NumSimilar to
O010_08
ncbi CAZy
- Reference [2]
GT nameDonorAcceptorPosition | Link.NumSimilar to
O010_09

aLRha(1->

GT NameDonorAcceptorScore / e-value
O69-O069_11


181 / 4e-56
O120-O120_14


168 / 7e-51
O135-RfbF


152 / 6e-45
O129-RfbF


151 / 9e-45
O13-RfbF


151 / 9e-45
O19-O019_08


149 / 7e-44
O19-O019_09


147 / 5e-43
O148-WbbQ


144 / 5e-42
O2-wegQ

aLRha(1->

->3)aLRha
->2)aLRha

144 / 5e-42
O50-O050_12


144 / 5e-42
O35-WcnY


142 / 4e-41
O150-WfgI


140 / 2e-40
O133-O133_07

aLRha(1->

->2)aLRha
->4)aDGalA

140 / 2e-40
O54-O054_10


132 / 1e-37
O147-WfbY


116 / 8e-32
O146-WbwV


112 / 3e-30
O71-WdaM

aLRha(1->

->4)bDGal

98 / 3e-25
O139-WfaI


96 / 9e-25
ncbi CAZy
- Reference [2]
GT nameDonorAcceptorPosition | Link.NumSimilar to
O010_11

aLRha(1->

->3)bDGlcNAc

GT NameDonorAcceptorScore / e-value
O100-O100_10


314 / 3e-107
O154-O154_14


157 / 1e-46
O97-O097_05


122 / 2e-33
O129-RfbG


107 / 2e-28
O135-RfbG


107 / 2e-28
O13-RfbG

aLRha(1->

->3)bDGlcNAc

107 / 2e-28
O154-O154_12


102 / 8e-27
O18-wekT


95 / 4e-24
O150-WfgK


92 / 2e-23
O180-wfcT


92 / 2e-23
O49-O049_13


91 / 6e-23
O4-WbuG

aLRha(1->

->6)aDGlc

89 / 5e-22
O34-O034_10


86 / 7e-21
O107-WclX

aLRha(1->

->4)aDGlcNAc

84 / 3e-20
O117-WbeB

aLRha(1->

->4)aDGlc

84 / 3e-20
O105-WbsY


81 / 2e-19
ncbi CAZy
- Reference [2]
GT nameDonorAcceptorPosition | Link.NumSimilar to
O010_12

aDGal(1->

->3)bDGlcNAc

GT NameDonorAcceptorScore / e-value
O100-O100_11


399 / 3e-140
O158-wcmT


264 / 4e-87
O133-O133_08

aDGalA(1->

->3)aDGlcNAc

254 / 1e-83
O116-O116_11


244 / 8e-80
O101-O101_07


172 / 3e-52
O89-O089_07


170 / 2e-51
O103-WbtG


168 / 1e-50
O121-WbqI


162 / 3e-48
O111-WbdH

aDGal(1->

->3)bDGlcNAc

145 / 3e-42
O138-WfaH

aDGalNAcA(1->

->3)bDGlcNAc

145 / 8e-42
O52-Orf16


133 / 1e-37
O40-WffO


85 / 2e-20
ncbi CAZy
- Reference [2]
NMR
1H-NMR5.44 4.83 5.04 5.11 4.97 4.97 4.61 4.62 1.31 1.30 1.17 1.18 2.07 2.10 2.53 1.26
Solvent: D2O
Temp: 85C
pD:
Ref: Acetone 2.225 ppm
Comment: 1H-NMR [1]
13C-NMR100.01 103.34 102.78 100.35 98.18
Solvent: D2O
Temp: 70C
pD:
Ref: Dioxane 67.4 ppm
Comment: 13C-NMR [1]
Non-Sugar Components
- Acetate - (R)-3-hydroxybutyryl
Literature
  • First Author: Kenne, L. "Structural studies of the O-specific side-chains of the Escherichia coli O 10 lipopolysaccharide". Carbohydrate Research. 151. (1986), pp 349-358 PubMed: [3533255]