O-Antigen Description

Serogroup:O117
Serotype H:4
Serotype K:98
Strain:
Structure:
->4)bDGalNAc(1->3)aLRha(1->4)aDGlc(1->4)bDGal(1->3)aDGalNAc(1->
Comment:- Structure [3]
GTs
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbeA

bDGalNAc(1->

GT NameDonorAcceptorScore / e-value
O107-WclW


539 / 0.0
O113-WbnA


92 / 1e-23
O185-O185_09


92 / 3e-23
O128-WbsK

bDGalNAc(1->

->4)aDGal

86 / 2e-21
O28-WbeX

bDGlcNAc(1->

->3)bDGalf

85 / 8e-21
O42-WbeX

bDGlcNAc(1->

->3)bDGalf

84 / 1e-20
O112-WfeM


84 / 7e-21
O124-WfeS


84 / 2e-20
O164-WfeS


84 / 2e-20
O38-O038_09


84 / 7e-21
O173-WcmW

bDGlc(1->

->3)bDGlcNAc

83 / 2e-20
O30-O030_06


82 / 4e-20
O12-O012_O2


82 / 8e-20
O28-O028ab_05


82 / 4e-20
O143-WfdV


81 / 1e-19
O115-WegI


81 / 2e-19
ncbi CAZy
- Reference [2]
- Another study gives accession number ACH97144.1 [1]
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbeB

aLRha(1->

->4)aDGlc

2 | 3
GT NameDonorAcceptorScore / e-value
O107-WclX

aLRha(1->

->4)aDGlcNAc

632 / 0.0
O18-wekT


142 / 5e-41
O142-O142_10


130 / 2e-36
O34-O034_10


119 / 1e-32
O4-WbuG

aLRha(1->

->6)aDGlc

117 / 4e-32
O180-wfcT


111 / 5e-30
O97-O097_05


110 / 1e-29
O51-O051_11


97 / 6e-25
O154-O154_14


89 / 3e-22
O10-O010_11


84 / 3e-20
O100-O100_10


83 / 4e-20
ncbi CAZy
- Reference [2]
- Another study gives accession number ACH97145.1 [1]
- Function inferred from [1]
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbeC

GT NameDonorAcceptorScore / e-value
O107-WclY


663 / 0.0
O48-O048_07


152 / 1e-44
O112-WfeK


145 / 9e-42
O119-WekI


144 / 3e-41
O37-O037_12


82 / 1e-19
ncbi CAZy
- Reference [2]
- Another study gives accession number ACH97146.1 [1]
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbeD

bDGal(1->

->3)aDGalNAc

4 | 1
GT NameDonorAcceptorScore / e-value
O107-WclZ

bDGal(1->

->3)aDGalNAc

556 / 0.0
O70-O070_13


269 / 6e-91
O155-WclG


268 / 2e-90
O71-WdaK

bDGal(1->

->3)aDGalNAc

241 / 4e-80
O37-O037_13


236 / 7e-78
O178-O178_09


232 / 2e-76
O153-O153_06


232 / 2e-76
O104-WbwC

bDGal(1->

->3)bDGalNAc

231 / 3e-76
O174-WbcZ


230 / 8e-76
O5-O05_15


224 / 1e-73
O171-O171_13


220 / 7e-72
O7-WbbD

bDGal(1->

->3)aDGlcNAc

218 / 8e-71
O160-O160_08


207 / 1e-66
O112-WfeJ


206 / 3e-66
O131-O131_11


205 / 4e-66
O33-O033_09


194 / 1e-61
O146-WbwW


191 / 2e-60
O185-O185_03


191 / 1e-60
O65-O065_13


177 / 4e-55
O28-O028ab_02


128 / 2e-36
O63-WbuP


120 / 1e-33
O54-O054_06


111 / 2e-30
O64-O064_03


108 / 2e-29
O74-O074_09


106 / 2e-28
O114-WbuP

bDGal(1->

->3)aDGlcNAc

100 / 3e-26
O92-O092_07


83 / 2e-20
O167-WfdH


82 / 8e-20
ncbi CAZy
- Reference [2]
- Another study gives accession number ACH97147.1 [1]
- Function inferred from [1]
NMR
1H-NMR4.97 4.45 4.19 4.30 4.42 3.73 3.73 2.08 4.96 3.58 3.84 3.59 4.18 3.81 3.73 4.91 4.17 3.86 3.56 4.03 1.27 4.72 4.03 3.84 4.06 3.76 3.90 3.85 2.06 4.60 3.57 3.73 4.04 3.76 3.88 3.82
Solvent: D2O
Temp: 65C
pD:
Ref: Acetone 2.230 ppm
Comment: 1H-NMR [3]
13C-NMR99.54 49.72 77.89 69.35 71.37 61.56 23.19 175.19 100.88 72.88 72.41 78.43 71.97 61.08 101.29 71.27 81.03 71.89 70.30 17.43 104.16 53.70 71.37 76.93 75.91 61.17 22.99 176.01 105.60 71.76 73.16 78.61 76.09 61.01
Solvent: D2O
Temp: 65C
pD:
Ref: Acetone 31.07 ppm
Comment: 13C-NMR [3]
Enzymes
FlippaseMENKKNHIYGIVNNIIVMLSPIIIIPFAIKNVGIDEYGYFVQVNIIYSCLISIFTASLSGYFIKSYLEKK LSFHDIFIIQLFINLFSTAIIGIYILLRFDVVAPYIFVVAMLTNTLNFEWFFHAIGAQKQLLIRNLIIKT MFVIIAIFILEVYKNIAVYFVIFGLNIIIANFLLGIYSFTKIKNKEYILFSNGWGGNRLFCFIKDAKFFF LSPTIGAVYQYGDQILVSLLFPKTALVFINLAKQIIGASVMVSGTLCRVEQKNIFSSEKIERLTKIKKTL MAYVFYLMTTSILIILIGPLILGMLIKETVSLGLNYYILIAGIYVFTSLSIFIDYIIGLTFRTEHYTSIS NICCATIVTLLNAMFLEKYGATFSLFSLFIGELLVFILLSTMHYINIKRRTYYNG
Trembl: A6M9B3
PolymeraseMVNILLCINMIILLICICIYLIALKSKKAPRLFALYLGAFILFIESHIILAITTSFNFGTSEWFFNGEFD YNTKTEVITSINLFIIGMILGSVFIASTITYKSSSYDVTFENKSIARFSWLLLVSILPFVVVYLIKLIAF ISSNGFYSLYINGNKISGGYILDLFFLTLYSLLISLKNKKKILFIILCVACVYLFIGTRLEFMFKVFPVL IYYILISKNIHKYFRLKNILAISILFWGLIFSMQYSVSARDNIEMGSNIITTFLKQQGVSVNVIGIAIKD KNNSLLSESVILSPLYDSAISLANSLVGVQSNGNSVEFAENSFSLSHKLSYLEDPSAYLAGYGVGGAAIA ELYIVGGYLACLIGGMLTYIFISILEKIAKKSFFNFIFVMLITGKILYSPRGEFLSFMSADRMLILFLIF TFSYKFLLATSNKKMSFKNE
Trembl: A6M9B4
Literature
  • First Author: Wang, Q. "Genetic and structural analyses of Escherichia coli O107 and O117 O-antigens". FEMS Immunol. Med. Microbiol.. 55(1). (2009), pp 47-54 PubMed: [19040662]
  • First Author: Liu, Y. "Sequencing and analysis of the Escherichia coli serogroup O117, O126, and O146 O-antigen gene clusters and development of PCR assays targeting serogroup O117-, O126-, and O146-specific DNA sequences". Molecular and Cellular Probes. 21(4). (2007), pp 295-302. PubMed: [17452091]
  • First Author: Leslie, MR. "The structure of the O-specific polysaccharide of Escherichia coli O117:K98:H4". Carbohydrate Research. 323. (2000), pp 103-110 PubMed: [10782292]