O-Antigen Description

Serogroup:O106
Serotype H:
Serotype K:
Strain:
Structure:
                    aDGlc(1->4)
                             |          
->6)aDMan(1->2)aDMan(1->2)bDMan(1->3)aDGlcNAc(1->
                                        |
                               aDGlc(1->6)
Comment:- The DNA sequence of O73, O77 and O106 are almost(>99%) identical. From [1]
GTs
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbaC

aDMan(1->

->2)bDMan

GT NameDonorAcceptorScore / e-value
O73-WbaC

aDMan(1->

->2)bDMan

672 / 0.0
O77-WbaC

aDMan(1->

->2)DMan

672 / 0.0
O44-O044_02


639 / 0.0
O17-O017_02


639 / 0.0
O176-O176_06


190 / 1e-58
ncbi CAZy
- Reference [1]
GT nameDonorAcceptorPosition | Link.NumSimilar to
WbaD

bDMan(1->

->3)aDGlcNAc

GT NameDonorAcceptorScore / e-value
O73-WbaD

bDMan(1->

->3)aDGlcNAc

704 / 0.0
O77-WbaD

bDMan(1->

->3)aDGlcNAc

704 / 0.0
O44-O044_03


649 / 0.0
O17-O017_03


649 / 0.0
O179-O179_08


381 / 4e-133
O62-O062_12


372 / 2e-129
O6-Orf7


350 / 7e-121
O59-WclC


241 / 4e-78
O176-O176_05


86 / 8e-21
ncbi CAZy
- Reference [1]
NMR
1H-NMR4.85 4.11 3.93 3.65 3.92 3.78 4.00 4.78 3.98 3.98 3.83 3.54 3.74 3.85 5.33 4.09 4.02 3.76 3.96 3.80 3.95 5.07 4.11 3.85 3.97 3.78 3.53 4.13 4.97 3.56 3.73 3.43 3.71 3.77 3.85 5.29 3.55 3.67 3.40 3.72 3.75 3.85 2.05
Solvent: D2O
Temp: 55C
pD:
Ref: TSP 0.0 ppm
Comment:
13C-NMR98.6 54.2 81.9 69.7 71.7 67.0 101.2 76.6 75.7 77.0 76.6 62.3 100.6 79.0 71.5 68.1 73.2 62.2 103.8 71.3 72.1 67.3 72.9 66.5 99.1 72.9 74.5 71.0 73.2 62.0 101.4 73.2 74.3 70.9 74.1 62.1 175.0 23.4
Solvent: D2O
Temp: 55C
pD:
Ref: TSP -1.6 ppm
Comment:
Enzymes
FlippaseMIKEIFSDGIFSLFNKICYFGFKTLAIILITRSLGEDVGGEFIFLVGFLEVLRVVTDFGVDLFVIKKYND STDKIKLLNVTFAQKILSGVIVLLLFCLYSFVQGYQYNVYIPIVLALPVALFFNFSNSYFQSLNSNKSLT FPIAIASIATCTIFAIQYFLNVKFNAWDYLCVELLFVSLVTLKLFVSVKFRFIRTSAFDVLMSILSLYKY TLSIGLTAVVVIIYSRIDNFYLKTFAPGDLAAYGQIFRMVDPLVMVSSVFSTVAYARFCRINLQEKNAFT KVFQFLLCIVAYGVLSSLVYFFIIKYLGHFVLISNVNNDFLIMMFLIVACVKCINGGTTAIIQSQGFYKV GLYVSYVCILTSIPTMYFLIMKYGVKGAAMTILLVECISFLLLLCSFFMIKKMRPKKTFEM
Trembl: Q1L811
PolymeraseMHKQYYSLLCNKIQFKHLAIYFSVFLSLSSCFLWGGADTFVSQVYIDILATISTALLVVLMFYYYINRVR YLSLTLLFAFVFSLIIGLPSIYLYYFKNANHGFEIICIWGMLINSILYLQTTETVIKEEKRYLTSLFYIL FSIVALCQLYKILIYLMFILNSGEGHLAIYTESEELLSQVPFFIRAISGFAVVMSLSTFYFKTPTYIKVI AFVLLASDLAIGIRNKFFFSVICIFILYMYSNEYRVRNLFKQLSKPIFLIAGFLCFSMVSYFREGYQIDF MIYIGIVLDSLSSTLGGMQNLFDMQSSGWDQLHPAVVFTQVLPLSGLGFLDDQQIAKDFSIIVLGDVSSG IALSSSGLLESSLLSLNLGVIIYLLYLSGVMLFIKWGLNNQRIIINFVAISMISGFFYAVRGELILPLAF LLKSLPIVLISPLLVKNKIYHGQ
Trembl: Q1L812
Literature
  • First Author: Wang, W. "A group of Escherichia coli and Salmonella enterica O antigens sharing a common backbone structure". Microbiology. 153. (2007), pp 2159-2167 PubMed: [17600060]